An Overview of Multiple Sequence Alignment Methods Applied to Transmembrane Proteins
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Publisher
Springer International Publishing
Link
http://link.springer.com/content/pdf/10.1007/978-3-030-05532-5_30
Reference30 articles.
1. Bahr, A., Thompson, J.D., Thierry, J.C., Poch, O.: BAliBASE (benchmark alignment database): enhancements for repeats, transmembrane sequences and circular permutations. Nucleic Acids Res. 29(1), 323–326 (2001). https://doi.org/10.1093/nar/29.1.323
2. Bhat, B., Ganai, N.A., Andrabi, S.M., Shah, R.A., Singh, A.: TM-Aligner: multiple sequence alignment tool for transmembrane proteins with reduced time and improved accuracy. Sci. Rep. 7(1), 1–8 (2017). https://doi.org/10.1038/s41598-017-13083-y
3. Chang, J.M., Di Tommaso, P., Taly, J.F., Notredame, C.: Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee. BMC Bioinform. 13(4), S1 (2012). https://doi.org/10.1186/1471-2105-13-S4-S1
4. Cserzö, M., Bernassau, J.M., Simon, I., Maigret, B.: New alignment strategy for transmembrane proteins. J. Mol. Biol. 243(3), 388–396 (1994). https://doi.org/10.1006/jmbi.1994.1666
5. Thompson, J.D., Koehl, P., Ripp, R., Poch, O.: BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. Proteins: Struct. Funct. Bioinform. 61(1), 127–136 (2005). https://doi.org/10.1002/prot.20527
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