Can We Detect T Cell Receptors from Long-Read RNA-Seq Data?
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Publisher
Springer International Publishing
Link
https://link.springer.com/content/pdf/10.1007/978-3-031-07802-6_38
Reference27 articles.
1. Mose, L.E., Selitsky, S.R., Bixby, L.M., et al.: Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V’DJer. Bioinformatics 32(24), 3729–3734 (2016). https://doi.org/10.1093/bioinformatics/btw526
2. Canzar, S., Neu, K.E., Tang, Q., Wilson, P.C., Khan, A.A.: BASIC: BCR assembly from single cells. Bioinformatics 33(3), 425–427 (2017). https://doi.org/10.1093/bioinformatics/btw631
3. Upadhyay, A.A., Kauffman, R.C., Wolabaugh, A.N., et al.: BALDR: A computational pipeline for paired heavy and light chain immunoglobulin reconstruction in single-cell RNA-seq data. Genome Med. 10, 20 (2018). https://doi.org/10.1186/s13073-018-0528-3
4. Ye, J., Ma, N., Madden, T.L., Ostell, J.M.: IgBLAST: An immunoglobulin variable domain sequence analysis tool. Nucleic Acids Res 41(Web Server issue), W34–W40 (2013)
5. Stubbington, M.J.T., Lönnberg, T., Proserpio, V., et al.: T cell fate and clonality inference from single-cell transcriptomes. Nat. Methods 13(4), 329–332 (2016). https://doi.org/10.1038/nmeth.3800
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