Basic Data Processing in QIIME 2

Author:

Xia Yinglin,Sun Jun

Publisher

Springer International Publishing

Reference26 articles.

1. biom-format.org. 2020a. The biom file format: Version 1.0. The BIOM Format Development Team. Last modified 05 Nov 2020. Accessed 8 March 2022. http://biom-format.org/documentation/format_versions/biom-1.0.html.

2. ———. 2020b. The biom file format: Version 2.1. The BIOM Format Development Team. Last modified 05 Nov 2020. Accessed 8 March 2022. http://biom-format.org/documentation/format_versions/biom-2.1.html.

3. Buza, Teresia M., Triza Tonui, Francesca Stomeo, Christian Tiambo, Robab Katani, Megan Schilling, Beatus Lyimo, Paul Gwakisa, Isabella M. Cattadori, Joram Buza, and Vivek Kapur. 2019. iMAP: An integrated bioinformatics and visualization pipeline for microbiome data analysis. BMC Bioinformatics 20 (1): 374. https://doi.org/10.1186/s12859-019-2965-4.

4. Callahan, Ben J., Kris Sankaran, Julia A. Fukuyama, Paul J. McMurdie, and Susan P. Holmes. 2016. Bioconductor workflow for microbiome data analysis: From raw reads to community analyses. F1000Research 5: 1492–1492. https://doi.org/10.12688/f1000research.8986.2. https://www.ncbi.nlm.nih.gov/pubmed/27508062. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4955027/.

5. Cock, Peter J.A., Christopher J. Fields, Naohisa Goto, Michael L. Heuer, and Peter M. Rice. 2010. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research 38 (6): 1767–1771. https://doi.org/10.1093/nar/gkp1137. https://www.ncbi.nlm.nih.gov/pubmed/20015970. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847217/.

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