Phylogenetic and Multiple-Locus Variable number tandem repeat analysis of Mycobacterium avium subsp. paratuberculosis isolates from Argentina

Author:

Vasini BrendaORCID,Farace Pablo,Ariel Amadio,Cirone Karina,Mendez Laura,Morsella Claudia,Fresia Pablo,Iraola Gregorio,Gioffré Andrea,Paolicchi Fernando

Funder

Consejo Nacional de Innovación, Ciencia y Tecnología

ANPCyT

Instituto Nacional de Tecnología Agropecuaria

Publisher

Springer Science and Business Media LLC

Subject

General Veterinary,General Medicine

Reference50 articles.

1. Ahlstrom C, Barkema HW, Stevenson K, Zadoks RN, Biek R, Kao R, Trewby H, Haupstein D, Kelton DF, Fecteau G, Labrecque O, Keefe GP, McKenna SL, De Buck J (2015) Limitations of variable number of tandem repeat typing identified through whole genome sequencing of Mycobacterium avium subsp. paratuberculosis on a national and herd level. BMC Genomics 16:161. https://doi.org/10.1186/s12864-015-1387-6

2. Ahlstrom C, Barkema HW, Stevenson K, Zadoks RN, Biek R, Kao R, Trewby H, Haupstein D, Kelton DF, Fecteau G, Labrecque O, Keefe GP, McKenna SL, Tahlan K, De Buck J (2016) Genome-wide diversity and phylogeography of mycobacterium avium subsp. paratuberculosis in Canadian Dairy Cattle. PLoS One 11(2):e0149017. https://doi.org/10.1371/journal.pone.0149017

3. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19(5):455–77. https://doi.org/10.1089/cmb.2012.0021

4. Barandiaran S, Perez AM, Gioffre AK, Martinez Vivot M, Cataldi AA, Zumarraga MJ (2015) Tuberculosis in swine co-infected with Mycobacterium avium subsp. hominissuis and Mycobacterium bovis in a cluster from Argentina. Epidemiol Infect 143(5):966–74. https://doi.org/10.1017/S095026881400332X

5. Beard PM, Daniels MJ, Henderson D, Pirie A, Rudge K, Buxton D, Rhind S, Greig A, Hutchings MR, McKendrick I, Stevenson K, Sharp JM (2001) Paratuberculosis infection of nonruminant wildlife in Scotland. J Clin Microbiol 39(4):1517–1521. https://doi.org/10.1128/JCM.39.4.1517-1521.2001

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