Using auto covariance method for functional discrimination of membrane proteins based on evolution information-Reference-Cited by-同舟云学术

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Using auto covariance method for functional discrimination of membrane proteins based on evolution information

Published:2009-10-07 Issue:5 Volume:38 Page:1497-1503
ISSN:0939-4451
Container-title:Amino Acids
language:en
Short-container-title:Amino Acids

Author:

Yang Li,Li Yizhou,Xiao Rongquan,Zeng Yuhong,Xiao Jiamin,Tan Fuyuan,Li Menglong

Publisher

Springer Science and Business Media LLC

Subject

Organic Chemistry,Clinical Biochemistry,Biochemistry

Link

http://link.springer.com/content/pdf/10.1007/s00726-009-0362-4.pdf

Reference43 articles.

1. Ahmad S, Sarai S (2005) PSSM-based prediction of DNA binding sites in proteins. BMC Bioinform 6:33

2. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

3. Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ (2004) A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins. BMC Bioinform 5:29

4. Bartlett GJ, Porter CT, Borkakoti N, Thornton JM (2002) Analysis of catalytic residues in enzyme active sites. J Mol Biol 324:105–121

5. Cai YD, Chou KC (2006) Predicting membrane protein type by functional domain composition and pseudo-amino acid composition. J Theor Biol 238:395–400

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