The Establishment and Application of a Kraken Classifier for <i>Salmonella</i> Plasmid Sequence Prediction
Author:
Publisher
Chinese Center for Disease Control and Prevention
Subject
Public Health, Environmental and Occupational Health,Infectious Diseases,Epidemiology
Link
https://weekly.chinacdc.cn/en/article/pdf/preview/10.46234/ccdcw2022.225
Reference15 articles.
1. Rychlik I, Gregorova D, Hradecka H. Distribution and function of plasmids in Salmonella enterica. Vet Microbiol 2006;112(1):1 − 10. http://dx.doi.org/10.1016/j.vetmic.2005.10.030.
2. Hull DM, Harrell E, Harden L, Thakur S. Multidrug resistance and virulence genes carried by mobile genomic elements in Salmonella enterica isolated from live food animals, processed, and retail meat in North Carolina, 2018-2019. Int J Food Microbiol 2022;378:109821. http://dx.doi.org/10.1016/j.ijfoodmicro.2022.109821.
3. Billman-Jacobe H, Liu YH, Haites R, Weaver T, Robinson L, Marenda M, et al. pSTM6-275, a conjugative IncHI2 plasmid of Salmonella enterica that confers antibiotic and heavy-metal resistance under changing physiological conditions. Antimicrob Agents Chemother 2018;62(5):e02357 − 17. http://dx.doi.org/10.1128/AAC.02357-17.
4. Rychlik I, Sebkova A, Gregorova D, Karpiskova R. Low-molecular-weight plasmid of Salmonella enterica serovar Enteritidis codes for retron reverse transcriptase and influences phage resistance. J Bacteriol 2001;183(9):2852 − 8. http://dx.doi.org/10.1128/JB.183.9.2852-2858.2001.
5. Morosini MI, Blázquez J, Negri MC, Cantón R, Loza E, Baquero F. Characterization of a nosocomial outbreak involving an epidemic plasmid encoding for TEM-27 in Salmonella enterica subspecies enterica serotype Othmarschen. J Infect Dis 1996;174(5):1015 − 20. http://dx.doi.org/10.1093/infdis/174.5.1015.
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