The Complete Genome Sequence of Conuropsis carolinensis, the Carolina Parakeet

Author:

Hains Taylor12,Pirro Stacy3,Bates John M1,Hackett Shannon J1

Affiliation:

1. Field Museum of Natural History

2. University of Chicago

3. Iridian Genomes

Abstract

The Carolina Parakeet (Conuropsis carolinensis) is an extinct species of parrot that was native to the eastern, midwest, and plains regions of the United States. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR21023482) and assembled genome (JAOBYI000000000).

Publisher

Naturalis Historia Publishing

Reference4 articles.

1. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing;Anton Bankevich;Journal of Computational Biology,2012

2. Trimmomatic: A Flexible Trimmer for Illumina Sequence Data;Anthony M. Bolger;Bioinformatics,2014

3. Lazarus ecology: Recovering the distribution and migratory patterns of the extinct Carolina parakeet;Kevin R. Burgio;Ecology and Evolution,2017

4. Zanfona, a genome assembly finishing tool for paired-end Illumina reads;M. Kieras,2021

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