A Topological Characterization of DNA Sequences Based on Chaos Geometry and Persistent Homology

Author:

Quan Ngoc Nguyen Dong1,Dong Tan Le Phuong2,Xing Lin3,Lin Lizhen3

Affiliation:

1. Yanqi Lake Beijing Institute of Mathematical Sciences and Applications,Beijing,China,101408

2. University of Waterloo,Department of Applied Mathematics,Waterloo,Canada

3. University of Notre Dame,Department of Applied and Computational Mathematics and Statistics,Notre Dame,USA

Publisher

IEEE

Reference45 articles.

1. A novel graphical and numerical representation for analyzing dna sequences based on codons;jafarzadeh;Match-Communications in Mathematical and Computer Chemistry,2012

2. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

3. Similarity analysis of DNA sequences based on codon usage

4. A novel 2D graphical representation of DNA sequences and its application

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