Mitochondrial genomes of Pleistocene megafauna retrieved from recent sediment layers of two Siberian lakes

Author:

Seeber PAORCID,Batke L,Dvornikov Y,Schmidt AORCID,Wang Y,Stoof-Leichsenring KR,Moon KL,Vohr SHORCID,Shapiro B,Epp LS

Abstract

AbstractAncient environmental DNA (aeDNA) from lake sediments has yielded remarkable insights for the reconstruction of past ecosystems, including suggestions of late survival of extinct species. However, translocation and lateral inflow of DNA in sediments can potentially distort the stratigraphic signal of the DNA. Using three different approaches on two short lake sediment cores of the Yamal peninsula, West Siberia, with ages spanning only the past hundreds of years, we detect DNA and identified mitochondrial genomes of multiple mammoth and woolly rhinoceros individuals—both species that have been extinct for thousands of years on the mainland. The occurrence of clearly identifiable aeDNA of extinct Pleistocene megafauna (e.g., > 400K reads in one core) throughout these two short subsurface cores, along with specificities of sedimentology and dating, confirm that processes acting on regional scales, such as extensive permafrost thawing, can influence the aeDNA record and should be accounted for in aeDNA paleoecology.

Publisher

Cold Spring Harbor Laboratory

Reference40 articles.

1. Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation;Earth-Science Rev,2019

2. Paper II - Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies

3. Baulin, V.V. , Chekhovskiy, A.L. , and Sukhodolskiy, S.E. (1981) Main stages of permafrost development in the North-East of Western part of USSR and Western Siberia. In History of development of permafrost in Eurasia: on the examples of separate regions. Dubikov, G.I. and Baulin, V.V. (eds). Moscow: Nauka, pp. 41–60.

4. Preservation potential of ancient plankton DNA in Pleistocene marine sediments

5. Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA

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