JfxNgs: A BAM/VCF viewer with javascript-based filtering/reformatting functionalities

Abstract

AbstractMotivationVisualizing BAM and VCF files is a common task for biologists, but they’re missing a way to filter and to explore the details of each short-read or variation.ResultsIn that context, we wrote an interactive java-based interface named JfxNgs that uses javascript snippets to filter and reformat BAM and VCF files.Availabilityhttps://github.com/lindenb/jvarkit/blob/master/docs/JfxNgs.mdContactpierre.lindenbaum@univ-nantes.fr.