Complementing model species with model clades

Author:

Mabry Makenzie E1ORCID,Abrahams R Shawn23ORCID,Al-Shehbaz Ihsan A4ORCID,Baker William J5ORCID,Barak Simon6ORCID,Barker Michael S7ORCID,Barrett Russell L8ORCID,Beric Aleksandra910ORCID,Bhattacharya Samik11ORCID,Carey Sarah B12ORCID,Conant Gavin C13ORCID,Conran John G14ORCID,Dassanayake Maheshi15ORCID,Edger Patrick P16ORCID,Hall Jocelyn C17ORCID,Hao Yue18ORCID,Hendriks Kasper P1119ORCID,Hibberd Julian M20ORCID,King Graham J21ORCID,Kliebenstein Daniel J22ORCID,Koch Marcus A23ORCID,Leitch Ilia J5ORCID,Lens Frederic1924ORCID,Lysak Martin A25ORCID,McAlvay Alex C26ORCID,McKibben Michael T W7ORCID,Mercati Francesco27ORCID,Moore Richard C28ORCID,Mummenhoff Klaus11ORCID,Murphy Daniel J29ORCID,Nikolov Lachezar A30ORCID,Pisias Michael31ORCID,Roalson Eric H32ORCID,Schranz M Eric33ORCID,Thomas Shawn K3435ORCID,Yu Qingyi36ORCID,Yocca Alan12ORCID,Pires J Chris37ORCID,Harkess Alex E12ORCID

Affiliation:

1. Florida Museum of Natural History, University of Florida , Gainesville, FL 32611 , USA

2. Department of Ecology and Evolutionary Biology, Yale University , New Haven, CT 06520 , USA

3. Department of Biochemistry, Purdue University , West Lafayette, IN 47906 , USA

4. Missouri Botanical Garden , Shaw Boulevard, St. Louis, MO 63110 , USA

5. Royal Botanic Gardens , Kew, Richmond, Surrey TW9 3AE , UK

6. Ben-Gurion University of the Negev, French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research , Midreshet Ben-Gurion, 8499000 , Israel

7. Department of Ecology and Evolutionary Biology, University of Arizona , Tucson, AZ 85721 , USA

8. National Herbarium of New South Wales, Australian Botanic Garden , Locked Bag 6002 , Mount Annan, NSW 2567, Australia

9. Department of Psychiatry, Washington University in Saint Louis School of Medicine , St. Louis, MO 63110 , USA

10. NeuroGenomics and Informatics Center, Washington University in Saint Louis School of Medicine , St. Louis, MO 63108 , USA

11. Department of Biology, Botany, University of Osnabrück , D-49076 Osnabrück , Germany

12. HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806 , USA

13. Department of Biological Sciences, Bioinformatics Research Center, Program in Genetics, North Carolina State University , Raleigh, NC 27695 , USA

14. ACEBB and SGC, School of Biological Sciences, The University of Adelaide , Adelaide, SA 5005 , Australia

15. Department of Biological Sciences, Louisiana State University , Baton Rouge, LA 70803 , USA

16. Department of Horticulture, Michigan State University , East Lansing, MI 48864 , USA

17. Department of Biological Sciences, University of Alberta , Edmonton, Alberta T6G 2E9 , Canada

18. Cancer and Cell Biology Division, Translational Genomics Research Institute , Phoenix, AZ 85004 , USA

19. Functional Traits, Naturalis Biodiversity Center , PO Box 9517, Leiden 2300 RA , the Netherlands

20. Department of Plant Sciences, University of Cambridge , Cambridge, CB2 1TN , UK

21. Southern Cross Plant Science, Southern Cross University , Lismore, NSW 2480 , Australia

22. Department of Plant Sciences, UC Davis , Davis, CA 95616 , USA

23. Centre for Organismal Studies (COS), Heidelberg University , 69120 Heidelberg , Germany

24. Institute of Biology Leiden, Plant Sciences, Leiden University , 2333 BE Leiden , the Netherlands

25. CEITEC, and NCBR, Faculty of Science, Masaryk University , 625 00 Brno , Czech Republic

26. Institute of Economic Botany, New York Botanical Garden , The Bronx, NY 10458 , USA

27. National Research Council (CNR), Institute of Biosciences and Bioresource (IBBR) , Palermo 90129 , Italy

28. Biology Department, Miami University , Oxford, OH 45056 , USA

29. Royal Botanic Gardens Victoria , Melbourne, VIC 3004 , Australia

30. Department of Biology, Indiana University , Bloomington, IN 47405 , USA

31. Division of Plant Sciences, University of Missouri , Columbia, MO 65211 , USA

32. School of Biological Sciences, Washington State University , Pullman, WA 99164-4236 , USA

33. Biosystematics Group, Wageningen University , 6708 PB Wageningen , the Netherlands

34. Division of Biological Sciences, University of Missouri , Columbia, MO 65211 , USA

35. Bioinformatics and Analytics Core, University of Missouri , Columbia, MO 65211 , USA

36. Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture , Hilo, HI 96720 , USA

37. Department of Soil and Crop Sciences, Colorado State University , Fort Collins, CO 80523-1170 , USA

Abstract

Abstract Model species continue to underpin groundbreaking plant science research. At the same time, the phylogenetic resolution of the land plant tree of life continues to improve. The intersection of these 2 research paths creates a unique opportunity to further extend the usefulness of model species across larger taxonomic groups. Here we promote the utility of the Arabidopsis thaliana model species, especially the ability to connect its genetic and functional resources, to species across the entire Brassicales order. We focus on the utility of using genomics and phylogenomics to bridge the evolution and diversification of several traits across the Brassicales to the resources in Arabidopsis, thereby extending scope from a model species by establishing a “model clade.” These Brassicales-wide traits are discussed in the context of both the model species Arabidopsis and the family Brassicaceae. We promote the utility of such a “model clade” and make suggestions for building global networks to support future studies in the model order Brassicales.

Funder

National Science Foundation, USA, and The United States-Israel Binational Science Foundation

The Goldinger Trust Jewish Fund

US Department of Energy

Publisher

Oxford University Press (OUP)

Subject

Cell Biology,Plant Science

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