The lowdown on breakdown: Open questions in plant proteolysis

Author:

Eckardt Nancy A1ORCID,Avin-Wittenberg Tamar2ORCID,Bassham Diane C3ORCID,Chen Poyu4,Chen Qian5ORCID,Fang Jun6ORCID,Genschik Pascal7ORCID,Ghifari Abi S8ORCID,Guercio Angelica M9ORCID,Gibbs Daniel J10ORCID,Heese Maren11ORCID,Jarvis R Paul6ORCID,Michaeli Simon12ORCID,Murcha Monika W8ORCID,Mursalimov Sergey12ORCID,Noir Sandra7ORCID,Palayam Malathy9ORCID,Peixoto Bruno6ORCID,Rodriguez Pedro L13ORCID,Schaller Andreas14ORCID,Schnittger Arp11ORCID,Serino Giovanna15ORCID,Shabek Nitzan9ORCID,Stintzi Annick14ORCID,Theodoulou Frederica L16ORCID,Üstün Suayib17ORCID,van Wijk Klaas J18ORCID,Wei Ning19ORCID,Xie Qi2021ORCID,Yu Feifei22ORCID,Zhang Hongtao16ORCID

Affiliation:

1. The Plant Cell, American Society of Plant Biologists , USA

2. Department of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Hebrew University of Jerusalem , Jerusalem 9190401 , Israel

3. Department of Genetics, Development and Cell Biology, Iowa State University , Ames, IA 50011 , USA

4. School of Biological Science and Technology, College of Science and Engineering, Kanazawa University , Kakuma-machi, Kanazawa 920-1192 , Japan

5. Ministry of Agriculture and Rural Affairs Key Laboratory for Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University , Beijing 100193 , China

6. Section of Molecular Plant Biology, Department of Biology, University of Oxford , Oxford OX1 3RB , UK

7. Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg , 12, rue du Général Zimmer, Strasbourg 67084 , France

8. School of Molecular Sciences, The University of Western Australia , Crawley, Western Australia 6009 , Australia

9. Department of Plant Biology, College of Biological Sciences, University of California-Davis , Davis, CA 95616 , USA

10. School of Biosciences, University of Birmingham , Edgbaston B1 2RU , UK

11. Department of Developmental Biology, University of Hamburg , Ohnhorststr. 18, Hamburg 22609 , Germany

12. Department of Postharvest Sciences, Agricultural Research Organization (ARO), Volcani Institute , Rishon LeZion 7505101 , Israel

13. Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia , Valencia ES-46022 , Spain

14. Department of Plant Physiology and Biochemistry, Institute of Biology, University of Hohenheim , Stuttgart 70599 , Germany

15. Department of Biology and Biotechnology, Sapienza Universita’ di Roma , p.le A. Moro 5, Rome 00185 , Italy

16. Plant Sciences and the Bioeconomy, Rothamsted Research , Harpenden AL5 2JQ , UK

17. Faculty of Biology and Biotechnology, Ruhr-University of Bochum , Bochum 44780 , Germany

18. Section of Plant Biology, School of Integrative Plant Sciences (SIPS), Cornell University , Ithaca, NY 14853 , USA

19. School of Life Sciences, Southwest University , Chongqing 400715 , China

20. State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, the Innovative Academy of Seed Design, Chinese Academy of Sciences , Beijing 100101 , China

21. University of Chinese Academy of Sciences , Beijing 100049 , China

22. College of Grassland Science and Technology, China Agricultural University , Beijing 100083 , China

Abstract

Abstract Proteolysis, including post-translational proteolytic processing as well as protein degradation and amino acid recycling, is an essential component of the growth and development of living organisms. In this article, experts in plant proteolysis pose and discuss compelling open questions in their areas of research. Topics covered include the role of proteolysis in the cell cycle, DNA damage response, mitochondrial function, the generation of N-terminal signals (degrons) that mark many proteins for degradation (N-terminal acetylation, the Arg/N-degron pathway, and the chloroplast N-degron pathway), developmental and metabolic signaling (photomorphogenesis, abscisic acid and strigolactone signaling, sugar metabolism, and postharvest regulation), plant responses to environmental signals (endoplasmic-reticulum-associated degradation, chloroplast-associated degradation, drought tolerance, and the growth-defense trade-off), and the functional diversification of peptidases. We hope these thought-provoking discussions help to stimulate further research.

Funder

Agence Nationale de la Recherche

IdEx Unistra

Biotechnology and Biological Sciences Research Council

Green Engineering Institute Strategic Programme Grant

National Natural Science Foundation of China

National Key R&D Program of China

Italian Ministry of Education and Merit

P.L. Rodriguez

The National Science Foundation

U.S. Department of Energy

Israeli Ministry of Agriculture and Rural Development

Israel Science Foundation

Israeli Ministry of Science and Technology

UK Research and Innovation Biotechnology and Biological Sciences Research Council

US National Science Foundation

US-Israel Binational Agricultural Research & Development

Publisher

Oxford University Press (OUP)

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