GENCODE reference annotation for the human and mouse genomes

Author:

Frankish Adam1,Diekhans Mark2,Ferreira Anne-Maud3,Johnson Rory45,Jungreis Irwin67ORCID,Loveland Jane1ORCID,Mudge Jonathan M1,Sisu Cristina89,Wright James10,Armstrong Joel2,Barnes If1,Berry Andrew1,Bignell Alexandra1,Carbonell Sala Silvia11,Chrast Jacqueline3,Cunningham Fiona1ORCID,Di Domenico Tomás12ORCID,Donaldson Sarah1,Fiddes Ian T2,García Girón Carlos1ORCID,Gonzalez Jose Manuel1,Grego Tiago1,Hardy Matthew1,Hourlier Thibaut1ORCID,Hunt Toby1,Izuogu Osagie G1,Lagarde Julien11,Martin Fergal J1ORCID,Martínez Laura12,Mohanan Shamika1,Muir Paul1314,Navarro Fabio C P8,Parker Anne1,Pei Baikang8,Pozo Fernando12,Ruffier Magali1ORCID,Schmitt Bianca M1,Stapleton Eloise1,Suner Marie-Marthe1ORCID,Sycheva Irina1,Uszczynska-Ratajczak Barbara15,Xu Jinuri8,Yates Andrew1,Zerbino Daniel1ORCID,Zhang Yan816,Aken Bronwen1,Choudhary Jyoti S10,Gerstein Mark81718,Guigó Roderic1119,Hubbard Tim J P20,Kellis Manolis67,Paten Benedict2,Reymond Alexandre3,Tress Michael L12,Flicek Paul1ORCID

Affiliation:

1. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK

2. UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA 95064, USA

3. Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland

4. Department of Medical Oncology, Inselspital, University Hospital, University of Bern, Bern, Switzerland

5. Department of Biomedical Research (DBMR), University of Bern, Bern, Switzerland

6. MIT Computer Science and Artificial Intelligence Laboratory, 32 Vasser St, Cambridge, MA 02139, USA

7. Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA

8. Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA

9. Department of Bioscience, Brunel University London, Uxbridge UB8 3PH, UK

10. Functional Proteomics, Division of Cancer Biology, Institute of Cancer Research, 123 Old Brompton Road, London SW7 3RP, UK

11. Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Dr. Aiguader 88, Barcelona, E-08003 Catalonia, Spain

12. Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, Spain

13. Department of Molecular, Cellular & Developmental Biology, Yale University, New Haven, CT 06520, USA

14. Systems Biology Institute, Yale University, West Haven, CT 06516, USA

15. Centre of New Technologies, University of Warsaw, Warsaw, Poland

16. Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA

17. Program in Computational Biology & Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA

18. Department of Computer Science, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA

19. Universitat Pompeu Fabra (UPF), Barcelona, E-08003 Catalonia, Spain

20. Department of Medical and Molecular Genetics, King's College London, Guys Hospital, Great Maze Pond, London SE1 9RT, UK

Funder

National Human Genome Research Institute

Wellcome Trust

Publisher

Oxford University Press (OUP)

Subject

Genetics

Reference48 articles.

1. The ENCODE (ENCyclopedia Of DNA Elements) Project;ENCODE Project Consortium;Science,2004

2. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project;ENCODE Project Consortium;Nature,2007

3. GENCODE: producing a reference annotation for ENCODE;Harrow;Genome Biol.,2006

4. An integrated encyclopedia of DNA elements in the human genome;ENCODE Project Consortium;Nature,2012

5. GENCODE: the reference human genome annotation for The ENCODE Project;Harrow;Genome Res.,2012

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