Application of unimodal probability distribution models for morphological phenotyping of budding yeast

Author:

Ohya Yoshikazu12ORCID,Ghanegolmohammadi Farzan13ORCID,Itto-Nakama Kaori1ORCID

Affiliation:

1. Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo , Chiba 277-8562 , Japan

2. Collaborative Research Institute for Innovative Microbiology, The University of Tokyo , Tokyo 113-8657 , Japan

3. Department of Biological Engineering, Massachusetts Institute of Technology , Cambridge, MA 02139 , United States

Abstract

Abstract Morphological phenotyping of the budding yeast Saccharomyces cerevisiae has helped to greatly clarify the functions of genes and increase our understanding of cellular functional networks. It is necessary to understand cell morphology and perform quantitative morphological analysis (QMA) but assigning precise values to morphological phenotypes has been challenging. We recently developed the Unimodal Morphological Data image analysis pipeline for this purpose. All true values can be estimated theoretically by applying an appropriate probability distribution if the distribution of experimental values follows a unimodal pattern. This reliable pipeline allows several downstream analyses, including detection of subtle morphological differences, selection of mutant strains with similar morphology, clustering based on morphology, and study of morphological diversity. In addition to basic research, morphological analyses of yeast cells can also be used in applied research to monitor breeding and fermentation processes and control the fermentation activity of yeast cells.

Funder

Ministry of Education, Culture, Sports, Science and Technology

Publisher

Oxford University Press (OUP)

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