The Digital MIQE Guidelines Update: Minimum Information for Publication of Quantitative Digital PCR Experiments for 2020

Author:

,Whale Alexandra S1,De Spiegelaere Ward2,Trypsteen Wim2,Nour Afif Abdel3,Bae Young-Kyung4,Benes Vladimir5,Burke Daniel6,Cleveland Megan7,Corbisier Philippe8,Devonshire Alison S1,Dong Lianhua9,Drandi Daniela10,Foy Carole A1,Garson Jeremy A11,He Hua-Jun7,Hellemans Jan12,Kubista Mikael13,Lievens Antoon8,Makrigiorgos Mike G14,Milavec Mojca15,Mueller Reinhold D16,Nolan Tania1718,O’Sullivan Denise M1,Pfaffl Michael W19,Rödiger Stefan20,Romsos Erica L7,Shipley Gregory L21,Taly Valerie22,Untergasser Andreas523,Wittwer Carl T24,Bustin Stephen A25,Vandesompele Jo212,Huggett Jim F

Affiliation:

1. National Measurement Laboratory (NML) at LGC, Teddington, UK

2. Ghent University, Ghent, Belgium

3. School of Engineering, The Holy Spirit University of Kaslik, Jounieh, Lebanon

4. Center for Bioanalysis, KRISS, Yuseong-gu, Daejeon, Republic of Korea

5. Genomics Core Facility, EMBL Heidelberg, Heidelberg, Germany

6. National Measurement Institute, Lindfield, NSW, Australia

7. National Institute of Standards and Technology, Gaithersburg, MD

8. European Commission, Joint Research Centre (JRC), Geel, Belgium

9. National Institute of Metrology, Beijing, P. R. China

10. Department of Molecular Biotechnologies and Health Sciences, University of Torino, Turin, Italy

11. Research Department of Infection, Division of Infection and Immunity, UCL, London, UK

12. Biogazelle, Zwijnaarde, Belgium

13. TATAA Biocenter, Sweden and Institute of Biotechnology of the Czech Academy of Sciences, Gothenburg, Sweden

14. Dana Farber Cancer Institute, Harvard Medical School, Boston, MA

15. Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia

16. RM Consulting, San Diego, CA

17. Institute of Population Health, Faculty of Medical and Human Sciences, University of Manchester, UK

18. The Gene Team Ltd., UK; Institute of Population Health, Faculty of Medical and Human Sciences, University of Manchester, Manchester, UK

19. Animal Physiology and Immunology, Technical University of Munich, School of Life Sciences Weihenstephan, Freising, Germany

20. Faculty of Health Sciences, Joint Faculty of the Brandenburg University of Technology Cottbus – Senftenberg, The Brandenburg Medical School Theodor Fontane and the University of Potsdam, Berlin, German

21. Shipley Consulting, LLC, Houston, TX

22. Centre de Recherche des Cordeliers, INSERM, Sorbonne Université, Université de Paris, Equipe labellisée Ligue Nationale Contre le Cancer, Paris, France

23. Zentrum für Molekulare Biologie, University of Heidelberg, Heidelberg, Germany

24. Department of Pathology, University of Utah, Salt Lake City, UT

25. Medical Technologies Research Centre, Faculty of Health, Education, Medicine & Social Care, Anglia Ruskin University, Essex, UK

Abstract

Abstract Digital PCR (dPCR) has developed considerably since the publication of the Minimum Information for Publication of Digital PCR Experiments (dMIQE) guidelines in 2013, with advances in instrumentation, software, applications, and our understanding of its technological potential. Yet these developments also have associated challenges; data analysis steps, including threshold setting, can be difficult and preanalytical steps required to purify, concentrate, and modify nucleic acids can lead to measurement error. To assist independent corroboration of conclusions, comprehensive disclosure of all relevant experimental details is required. To support the community and reflect the growing use of dPCR, we present an update to dMIQE, dMIQE2020, including a simplified dMIQE table format to assist researchers in providing key experimental information and understanding of the associated experimental process. Adoption of dMIQE2020 by the scientific community will assist in standardizing experimental protocols, maximize efficient utilization of resources, and further enhance the impact of this powerful technology.

Funder

UK Government Department of Business, Energy and Industrial Strategy

BIOCEV

ERDF

Publisher

Oxford University Press (OUP)

Subject

Biochemistry (medical),Clinical Biochemistry

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