GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies-Reference-Cited by-同舟云学术

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies

Published:2012-04-06 Issue:11 Volume:28 Page:1429-1437
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:Bioinformatics

Author:

Gritsenko A. A.,Nijkamp J. F.,Reinders M. J. T.,Ridder D. d.

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/28/11/1429/16905550/bts175.pdf

Reference25 articles.

1. Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

2. BamTools: a C++ API and toolkit for analyzing and managing BAM files

3. Scaffolding pre-assembled contigs using SSPACE

4. SOPRA: Scaffolding algorithm for paired reads via statistical optimization

5. Fast algorithms for large-scale genome alignment and comparison

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