Benchmarking substrate-based kinase activity inference using phosphoproteomic data-Reference-Cited by-同舟云学术

Benchmarking substrate-based kinase activity inference using phosphoproteomic data

Published:2017-02-13 Issue:12 Volume:33 Page:1845-1851
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Hernandez-Armenta Claudia¹,Ochoa David¹,Gonçalves Emanuel¹,Saez-Rodriguez Julio¹²,Beltrao Pedro¹

Affiliation:

1. European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK

2. RWTH Aachen University, Faculty of Medicine, Joint Research Center for Computational Biomedicine (JRC-COMBINE), Wendlingweg 2, Aachen, Germany

Funder

HFSP CDA

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/33/12/1845/25155553/btx082.pdf

Reference52 articles.

1. Reduced-representation phosphosignatures measured by quantitative targeted MS capture cellular states and enable large-scale comparison of drug-induced phenotypes;Abelin;Mol. Cell. Proteomics,2016

2. Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways;Beck;Blood,2014

3. Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response;Beli;Molecular Cell,2012

4. Kinase-substrate enrichment analysis provides insights into the heterogeneity of signaling pathway activation in leukemia cells;Casado;Sci. Signal,2013

5. Decoding signalling networks by mass spectrometry-based proteomics;Choudhary;Nat. Rev.. Mol. Cell Biol,2010

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