RNApuzzler: efficient outerplanar drawing of RNA-secondary structures-Reference-Cited by-同舟云学术

RNApuzzler: efficient outerplanar drawing of RNA-secondary structures

Published:2018-09-19 Issue:8 Volume:35 Page:1342-1349
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Wiegreffe Daniel¹²^ORCID,Alexander Daniel¹,Stadler Peter F²^ORCID,Zeckzer Dirk¹

Affiliation:

1. Image and Signal Processing Group, Department of Computer Science, Leipzig University, Leipzig, Germany

2. Bioinformatics Group, Department of Computer Science, Leipzig University, Leipzig, Germany

Funder

DFG project

Competence Center for Scalable Data Services and Solutions

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/8/1342/28500712/bty817.pdf

Reference19 articles.

1. Efficient drawing of RNA secondary structure;Auber;J. Graph Algorithms Appl,2006

2. An improved algorithm for nucleic acid secondary structure display;Bruccoleri;Bioinformatics,1988

3. An efficient algorithm for planar drawing of RNA structures with pseudoknots of any type;Byun;J. Bioinform. Comput. Biol,2016

4. VARNA: interactive drawing and editing of the RNA secondary structure;Darty;Bioinformatics,2009

5. Rfam: an RNA family database;Griffiths-Jones;Nucleic Acids Res,2003

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