Improving RNA nearest neighbor parameters for helices by going beyond the two-state model-Reference-Cited by-同舟云学术

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Improving RNA nearest neighbor parameters for helices by going beyond the two-state model

Published:2018-05-01 Issue:10 Volume:46 Page:4883-4892
ISSN:0305-1048
Container-title:Nucleic Acids Research
language:en
Short-container-title:

Author:

Spasic Aleksandar¹²,Berger Kyle D¹²,Chen Jonathan L²³,Seetin Matthew G¹²,Turner Douglas H²³,Mathews David H¹²⁴^ORCID

Affiliation:

1. Department of Biochemistry & Biophysics, University of Rochester Medical Center, Rochester, NY 14642, USA

2. Center for RNA Biology, University of Rochester Medical Center, Rochester, NY 14642, USA

3. Department of Chemistry, University of Rochester, Rochester, NY 14627, USA

4. Department of Biostatistics & Computational Biology, University of Rochester Medical Center, Rochester, NY 14642, USA

Funder

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Genetics

Link

http://academic.oup.com/nar/article-pdf/46/10/4883/24962236/gky270.pdf

Reference56 articles.

1. NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure;Turner;Nucleic Acids Res.,2010

2. RNAstructure: software for RNA secondary structure prediction and analysis;Reuter;BMC Bioinformatics,2010

3. ViennaRNA Package 2.0;Lorenz;Algorithms Mol. Biol.,2011

4. Mfold web server for nucleic acid folding and hybridization prediction;Zuker;Nucleic Acids Res.,2003

5. UNAFold;Markham,2008

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