CerealsDB—new tools for the analysis of the wheat genome: update 2020-Reference-Cited by-同舟云学术

CerealsDB—new tools for the analysis of the wheat genome: update 2020

Published:2020-01-01 Issue: Volume:2020 Page:
ISSN:1758-0463
Container-title:Database
language:en
Short-container-title:

Author:

Wilkinson Paul A¹²,Allen Alexandra M¹,Tyrrell Simon³,Wingen Luzie U⁴,Bian Xingdong³,Winfield Mark O¹,Burridge Amanda¹,Shaw Daniel S¹,Zaucha Jan⁵,Griffiths Simon⁴,Davey Robert P³,Edwards Keith J¹,Barker Gary L A¹

Affiliation:

1. School of Biological Sciences, University of Bristol, Bristol Life Sciences Building, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK

2. Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, BioSciences Building, Crown Street, Liverpool, L69 7ZB, UK

3. Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK

4. John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK

5. Department of Bioinformatics, Wissenschaftszentrum Weihenstephan, Technical University of Munich, 85354 Freising, Germany

Abstract

Abstract CerealsDB (www.cerealsdb.uk.net) is an online repository of mainly hexaploid wheat (Triticum aestivum) single nucleotide polymorphisms (SNPs) and genotyping data. The CerealsDB website has been designed to enable wheat breeders and scientists to select the appropriate markers for research breeding tasks, such as marker-assisted selection. We report a large update of genotyping information for over 6000 wheat accessions and describe new webtools for exploring and visualizing the data. We also describe a new database of quantitative trait loci that links phenotypic traits to CerealsDB SNP markers and allelic scores for each of those markers. CerealsDB is an open-access website that hosts information on wheat SNPs considered useful for both plant breeders and research scientists. The latest CerealsDB database is available at https://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php.

Funder

Biotechnology and Biological Sciences Research Council, UK

Publisher

Oxford University Press (OUP)

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,Information Systems

Link

http://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa060/33563618/baaa060.pdf

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3. CerealsDB 3.0: expansion of resources and data integration;Wilkinson;BMC Bioinformatics,2016