CNSA: a data repository for archiving omics data

Author:

Guo Xueqin1,Chen Fengzhen1,Gao Fei1,Li Ling1,Liu Ke1,You Lijin1,Hua Cong1,Yang Fan1,Liu Wanliang1,Peng Chunhua1,Wang Lina1,Yang Xiaoxia1,Zhou Feiyu1,Tong Jiawei1,Cai Jia1,Li Zhiyong1,Wan Bo1,Zhang Lei1,Yang Tao1,Zhang Minwen1,Yang Linlin1,Yang Yawen1,Zeng Wenjun1,Wang Bo1,Wei Xiaofeng1,Xu Xun123

Affiliation:

1. China National GeneBank, Shenzhen 518120, China

2. BGI-Shenzhen, Shenzhen 518083, China

3. Guangdong Provincial Key Laboratory of Genome Read and Write, Shenzhen 518120, China

Abstract

Abstract With the application and development of high-throughput sequencing technology in life and health sciences, massive multi-omics data brings the problem of efficient management and utilization. Database development and biocuration are the prerequisites for the reuse of these big data. Here, relying on China National GeneBank (CNGB), we present CNGB Sequence Archive (CNSA) for archiving omics data, including raw sequencing data and its further analyzed results which are organized into six objects, namely Project, Sample, Experiment, Run, Assembly and Variation at present. Moreover, CNSA has created a correlation model of living samples, sample information and analytical data on some projects. Both living samples and analytical data are directly correlated with the sample information. From either one, information or data of the other two can be obtained, so that all data can be traced throughout the life cycle from the living sample to the sample information to the analytical data. Complying with the data standards commonly used in the life sciences, CNSA is committed to building a comprehensive and curated data repository for storing, managing and sharing of omics data. We will continue to improve the data standards and provide free access to open-data resources for worldwide scientific communities to support academic research and the bio-industry. Database URL: https://db.cngb.org/cnsa/.

Funder

Guangdong Provincial Key Laboratory of Genome Read and Write

Publisher

Oxford University Press (OUP)

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,Information Systems

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