rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots-Reference-Cited by-同舟云学术

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rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots

Published:2019-01-01 Issue: Volume:2019 Page:
ISSN:1758-0463
Container-title:Database
language:en
Short-container-title:

Author:

Jelínek Jan¹²,Hoksza David¹³,Hajič Jan¹,Pešek Jan¹,Drozen Jan¹,Hladík Tomáš¹,Klimpera Michal¹,Vohradský Jiří²,Pánek Josef²

Affiliation:

1. Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha

2. Laboratory of Bioinformatics, Institute of Microbiology, The Czech Academy of Sciences, Videnska, Praha

3. Luxembourg Centre for Systems Biomedicine, University of Luxembourg, avenue du Swing, Belvaux

Funder

ELIXIR CZ

Grant Agency of the Czech Republic

Publisher

Oxford University Press (OUP)

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,Information Systems

Link

http://academic.oup.com/database/article-pdf/doi/10.1093/database/baz047/28519793/baz047.pdf

Reference33 articles.

1. Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules;Sussman;Acta Crystallogr. D Biol. Crystallogr.,1998

2. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs;Cannone;BMC Bioinformatics,2002

3. RNA STRAND: the RNA secondary structure and statistical analysis database;Andronescu;BMC Bioinformatics,2008

4. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families;Kalvari;Nucleic Acids Res.,2017

5. An algorithm for template-based prediction of secondary structures of individual RNA sequences;Panek;Front. Genet.,2017

Cited by 4 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Phylogenies of the 16S rRNA gene and its hypervariable regions lack concordance with core genome phylogenies;Microbiome;2022-07-08

2. R2DT is a framework for predicting and visualising RNA secondary structure using templates;Nature Communications;2021-06-09

3. R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types;2020-09-11

4. rboAnalyzer: A Software to Improve Characterization of Non-coding RNAs From Sequence Database Search Output;Frontiers in Genetics;2020-07-28

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