A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data

Author:

Orenstein Yaron1,Shamir Ron1

Affiliation:

1. Blavatnik School of Computer Science, Tel-Aviv University, Tel Aviv 69978, Israel

Publisher

Oxford University Press (OUP)

Subject

Genetics

Reference31 articles.

1. Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo;Aparicio;Curr. Protoc. Cell Biol.,2004

2. Genome-wide mapping of in vivo protein-DNA interactions;Johnson;Science,2007

3. ChIP-exo method for identifying genomic location of DNA-binding proteins with near-single-nucleotide accuracy;Rhee;Curr. Protoc. Mol. Biol.,2012

4. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities;Berger;Nat. Biotechnol.,2006

5. De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis;Fordyce;Nat. Biotechnol.,2010

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