Affiliation:
1. Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
2. Medical Genetics Center (MGZ), Munich, Germany
3. Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
Abstract
Abstract
For more than two decades, the UCSC Genome Browser database (https://genome.ucsc.edu) has provided high-quality genomics data visualization and genome annotations to the research community. As the field of genomics grows and more data become available, new modes of display are required to accommodate new technologies. New features released this past year include a Hi-C heatmap display, a phased family trio display for VCF files, and various track visualization improvements. Striving to keep data up-to-date, new updates to gene annotations include GENCODE Genes, NCBI RefSeq Genes, and Ensembl Genes. New data tracks added for human and mouse genomes include the ENCODE registry of candidate cis-regulatory elements, promoters from the Eukaryotic Promoter Database, and NCBI RefSeq Select and Matched Annotation from NCBI and EMBL-EBI (MANE). Within weeks of learning about the outbreak of coronavirus, UCSC released a genome browser, with detailed annotation tracks, for the SARS-CoV-2 RNA reference assembly.
Funder
National Human Genome Research Institute
National Institutes of Health
Howard Hughes Medical Institute
Silicon Valley Community Foundation
California Institute for Regenerative Medicine
Center for Information Technology Research in the Interest of Society
University of California Office of the President Emergency
UCSC Baskin Endowed Chair Funds
Publisher
Oxford University Press (OUP)
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