PhaMMseqs: a new pipeline for constructing phage gene phamilies using MMseqs2
Author:
Affiliation:
1. Department of Biological Sciences, University of Pittsburgh , Pittsburgh, PA 15260, USA
2. Department of Biology, James Madison University , Harrisonburg, VA 22807, USA
Abstract
Funder
National Institutes of Health
Howard Hughes Medical Institute
Publisher
Oxford University Press (OUP)
Subject
Genetics (clinical),Genetics,Molecular Biology
Link
https://academic.oup.com/g3journal/advance-article-pdf/doi/10.1093/g3journal/jkac233/46129075/jkac233.pdf
Reference30 articles.
1. Biopython: freely available Python tools for computational molecular biology and bioinformatics;Cock;Bioinformatics,2009
2. Phamerator: a bioinformatic tool for comparative bacteriophage genomics;Cresawn;BMC Bioinformatics,2011
3. Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments;Daily;BMC Bioinformatics,2016
4. Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation;Grazziotin;Nucleic Acids Res,2017
5. An inclusive Research Education Community (iREC): impact of the SEA-PHAGES program on research outcomes and student learning;Hanauer;Proc Natl Acad Sci U S A,2017
Cited by 23 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. Complete genomes of two cluster AK Arthrobacter phages isolated from soil samples in Newburgh, NY, United States;Microbiology Resource Announcements;2024-09-12
2. How to introduce a new bacteriophage on the block: a short guide to phage classification;Journal of Virology;2024-09-12
3. Genome sequence of Xenia2 a DV cluster phage that infects Gordonia rubripertincta;Microbiology Resource Announcements;2024-09-10
4. Genome-wide screen overexpressing mycobacteriophage Amelie genes identifies multiple inhibitors of mycobacterial growth;2024-08-14
5. A Bioinformatic Ecosystem for Bacteriophage Genomics: PhaMMSeqs, Phamerator, pdm_utils, PhagesDB, DEPhT, and PhamClust;Viruses;2024-08-10
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3