A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources

Author:

Wiley Ken1,Findley Laura1,Goldrich Madison1,Rakhra-Burris Tejinder K2,Stevens Ana1,Williams Pamela2,Bult Carol J3ORCID,Chisholm Rex4,Deverka Patricia5,Ginsburg Geoffrey S6,Green Eric D1,Jarvik Gail7,Mensah George A8,Ramos Erin1,Relling Mary V9,Roden Dan M10ORCID,Rowley Robb1,Alterovitz Gil11,Aronson Samuel12,Bastarache Lisa13,Cimino James J14ORCID,Crowgey Erin L15,Del Fiol Guilherme16ORCID,Freimuth Robert R17,Hoffman Mark A18ORCID,Jeff Janina19,Johnson Kevin20,Kawamoto Kensaku16ORCID,Madhavan Subha21,Mendonca Eneida A2223,Ohno-Machado Lucila24,Pratap Siddharth25,Taylor Casey Overby26,Ritchie Marylyn D27,Walton Nephi28,Weng Chunhua29,Zayas-Cabán Teresa30,Manolio Teri A1,Williams Marc S31

Affiliation:

1. National Human Genome Research Institute, National Institutes of Health , Bethesda, Maryland, USA

2. Department of Medicine, Center for Applied Genomics & Precision Medicine, Duke University , Durham, North Carolina, USA

3. The Jackson Laboratory , Bar Harbor, Maine, USA

4. Feinberg School of Medicine, Northwestern University , Chicago, Illinois, USA

5. Center for Translational and Policy Research in Precision Medicine, University of California at San Francisco , San Francisco, California, USA

6. All of Us Research Program, National Institutes of Health, Bethesda, Maryland, USA

7. Division of Medical Genetics, University of Washington , Seattle, Washington, USA

8. National Heart, Lung, and Blood Institute, National Institutes of Health , Bethesda, Maryland, USA

9. Pharmacy and Pharmaceutical Sciences, St. Jude Children’s Research Hospital , Memphis, Tennessee, USA

10. Departments of Medicine, Pharmacology, and Biomedical Informatics, Vanderbilt University Medical Center , Nashville, Tennessee, USA

11. Department of Medicine, Brigham and Women’s Hospital , Boston, Massachusetts, USA

12. Mass General Brigham, Research Information Sciences and Computing, Somerville, Massachusetts, USA

13. Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, USA

14. Heersink School of Medicine, University of Alabama at Birmingham, Alabama, USA

15. Nemours Children’s Health , Wilmington, Delaware, USA

16. Department of Biomedical Informatics, University of Utah School of Medicine , Salt Lake City, Utah, USA

17. Department of Artificial Intelligence and Informatics, Mayo Clinic , Rochester, Minnesota, USA

18. School of Medicine, Children’s Mercy Hospital Kansas City, University of Missouri Kansas City , Lees Summit, Missouri, USA

19. Illumina , San Diego, California, USA

20. Department of Biomedical Informatics, Vanderbilt University Medical Center , Nashville, Tennessee, USA

21. Innovation Center for Biomedical Informatics, Georgetown University , Washington, District of Columbia, USA

22. Regenstrief Institute, Inc. , Indianapolis, Indiana, USA

23. Department of Pediatrics, Department of Biostatistics and Health Data Sciences, Indiana University School of Medicine , Indianapolis, Indiana, USA

24. Department of Biomedical Informatics, University of California San Diego , La Jolla, California, USA

25. Bioinformatics Core, Meharry Medical College, Nashville, Tennessee, USA

26. Department of Medicine, Johns Hopkins University , Baltimore, Maryland, USA

27. Department of Genetics, Perelman School of Medicine, Institute for Biomedical Informatics, Penn Center for Precision Medicine, University of Pennsylvania , Philadelphia, Pennsylvania, USA

28. Intermountain Precision Genomics, Intermountain Healthcare, St George, Utah, USA

29. Department of Biomedical Informatics, Columbia University , New York, New York, USA

30. National Library of Medicine, National Institutes of Health , Bethesda, Maryland, USA

31. Geisinger, Genomic Medicine Institute , Danville, Pennsylvania, USA

Abstract

Abstract Objective The Genomic Medicine Working Group of the National Advisory Council for Human Genome Research virtually hosted its 13th genomic medicine meeting titled “Developing a Clinical Genomic Informatics Research Agenda”. The meeting’s goal was to articulate a research strategy to develop Genomics-based Clinical Informatics Tools and Resources (GCIT) to improve the detection, treatment, and reporting of genetic disorders in clinical settings. Materials and Methods Experts from government agencies, the private sector, and academia in genomic medicine and clinical informatics were invited to address the meeting's goals. Invitees were also asked to complete a survey to assess important considerations needed to develop a genomic-based clinical informatics research strategy. Results Outcomes from the meeting included identifying short-term research needs, such as designing and implementing standards-based interfaces between laboratory information systems and electronic health records, as well as long-term projects, such as identifying and addressing barriers related to the establishment and implementation of genomic data exchange systems that, in turn, the research community could help address. Discussion Discussions centered on identifying gaps and barriers that impede the use of GCIT in genomic medicine. Emergent themes from the meeting included developing an implementation science framework, defining a value proposition for all stakeholders, fostering engagement with patients and partners to develop applications under patient control, promoting the use of relevant clinical workflows in research, and lowering related barriers to regulatory processes. Another key theme was recognizing pervasive biases in data and information systems, algorithms, access, value, and knowledge repositories and identifying ways to resolve them.

Funder

Administrative and conference management support for the genomic medicine workshops was funded by a supplemental funding award

National Human Genome Research Institute

Publisher

Oxford University Press (OUP)

Subject

Health Informatics

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