Affiliation:
1. Department of Biomedical Informatics, Columbia University , New York, NY 10032, United States
2. Observational Health Data Analytics, Janssen Research and Development , Titusville, NJ 08560, United States
Abstract
Abstract
Objectives
To automatically construct a drug indication taxonomy from drug labels using generative Artificial Intelligence (AI) represented by the Large Language Model (LLM) GPT-4 and real-world evidence (RWE).
Materials and Methods
We extracted indication terms from 46 421 free-text drug labels using GPT-4, iteratively and recursively generated indication concepts and inferred indication concept-to-concept and concept-to-term subsumption relations by integrating GPT-4 with RWE, and created a drug indication taxonomy. Quantitative and qualitative evaluations involving domain experts were performed for cardiovascular (CVD), Endocrine, and Genitourinary system diseases.
Results
2909 drug indication terms were extracted and assigned into 24 high-level indication categories (ie, initially generated concepts), each of which was expanded into a sub-taxonomy. For example, the CVD sub-taxonomy contains 242 concepts, spanning a depth of 11, with 170 being leaf nodes. It collectively covers a total of 234 indication terms associated with 189 distinct drugs. The accuracies of GPT-4 on determining the drug indication hierarchy exceeded 0.7 with “good to very good” inter-rater reliability. However, the accuracies of the concept-to-term subsumption relation checking varied greatly, with “fair to moderate” reliability.
Discussion and Conclusion
We successfully used generative AI and RWE to create a taxonomy, with drug indications adequately consistent with domain expert expectations. We show that LLMs are good at deriving their own concept hierarchies but still fall short in determining the subsumption relations between concepts and terms in unregulated language from free-text drug labels, which is the same hard task for human experts.
Funder
National Center for Advancing Translational Sciences
National Library of Medicine
National Institutes of Health
Publisher
Oxford University Press (OUP)
Cited by
1 articles.
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