Draft genome of Rosenbergiella nectarea strain 8N4T provides insights into the potential role of this species in its plant host

Author:

Laviad-Shitrit Sivan1ORCID,Izhaki Ido1,Whitman William B.2,Shapiro Nicole3ORCID,Woyke Tanja3,Kyrpides Nikos C.3ORCID,Halpern Malka4ORCID

Affiliation:

1. Department of Evolutionary and Environmental Biology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel

2. Department of Microbiology, University of Georgia, Athens, GA, USA

3. Department of Energy Joint Genome Institute, DOE Joint Genome Institute, Berkeley, CA, USA

4. Department of Biology and Environment, Faculty of Natural Sciences, University of Haifa, Oranim, Kiryat Tivon, Israel

Abstract

Background Rosenbergiella nectarea strain 8N4T, the type species of the genus Rosenbergiella, was isolated from Amygdalus communis (almond) floral nectar. Other strains of this species were isolated from the floral nectar of Citrus paradisi (grapefruit), Nicotiana glauca (tobacco tree) and from Asphodelus aestivus. R. nectarea strain 8N4T is a Gram-negative, oxidase-negative, facultatively anaerobic bacterium in the family Enterobacteriaceae. Results Here we describe features of this organism, together with its genome sequence and annotation. The DNA GC content is 47.38%, the assembly size is 3,294,717 bp, and the total number of genes are 3,346. The genome discloses the possible role that this species may play in the plant. The genome contains both virulence genes, like pectin lyase and hemolysin, that may harm plant cells and genes that are predicted to produce volatile compounds that may impact the visitation rates by nectar consumers, such as pollinators and nectar thieves. Conclusions The genome of R. nectarea strain 8N4T reveals a mutualistic interaction with the plant host and a possible effect on plant pollination and fitness.

Funder

Community Sequencing Program of the U.S. Department of Energy’s Joint Genome Institute

Office of Science of the U.S. Department of Energy

Israel Science Foundation

Publisher

PeerJ

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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