On the Representation of De Bruijn Graphs-Reference-Cited by-同舟云学术

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On the Representation of De Bruijn Graphs

Published:2015-05 Issue:5 Volume:22 Page:336-352
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Chikhi Rayan¹²,Limasset Antoine³,Jackman Shaun⁴,Simpson Jared T.⁵,Medvedev Paul¹⁶²

Affiliation:

1. Department of Computer Science and Engineering, The Pennsylvania State University, State College, Pennsylvania.

2. Genome Sciences Institute of the Huck, The Pennsylvania State University, State College, Pennsylvania.

3. ENS Cachan Brittany, Bruz, France.

4. Canada's Michael Smith Genome Sciences Centre, Canada.

5. Ontario Institute for Cancer Research, Toronto, Canada.

6. Department of Biochemistry and Molecular Biology, The Pennsylvania State University, State College, Pennsylvania.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2014.0160

Reference44 articles.

1. The Burrows-Wheeler Transform: Data Compression, Suffix Arrays, and Pattern Matching

2. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

3. Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

4. Space/time trade-offs in hash coding with allowable errors

5. Ray Meta: scalable de novo metagenome assembly and profiling

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1. Gra-CRC-miRTar: The pre-trained nucleotide-to-graph neural networks to identify potential miRNA targets in colorectal cancer;Computational and Structural Biotechnology Journal;2024-12

2. Cdbgtricks: Strategies to update a compacted de Bruijn graph;2024-05-28

3. Gra-CRC-miRTar: The pre-trained nucleotide-to-graph neural networks to identify potential miRNA targets in colorectal cancer;2024-04-20

4. The representation of n-cutting site splicing languages for a single string with palindromic rule via de Bruijn graph;AIP Conference Proceedings;2024

5. Methods for Pangenomic Core Detection;Methods in Molecular Biology;2024

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