Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library-Reference-Cited by-同舟云学术

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Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library

Published:2018-08 Issue:8 Volume:25 Page:871-881
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Nowicki Marek¹,Bzhalava Davit²,BaŁa Piotr³

Affiliation:

1. Faculty of Mathematics and Computer Science, Nicolaus Copernicus University in Toruń, Poland.

2. Department of Laboratory Medicine, Karolinska Institutet, Stockholm, Sweden.

3. Interdisciplinary Center for Mathematical and Computational Modeling, University of Warsaw, Warsaw, Poland.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2018.0079

Reference19 articles.

1. Basic local alignment search tool

2. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3. TurboBLAST : a parallel implementation of blast built on the turbohub

4. Parallelization of local BLAST service on workstation clusters

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2. Parallelization of the Smith-Waterman Algorithm to Accelerate DNA Sequence Alignment;2024 3rd International Conference on Artificial Intelligence For Internet of Things (AIIoT);2024-05-03

3. Accelerating Multiple Sequence Alignments Using Parallel Computing;Computation;2024-02-09

4. PSALR: Parallel Sequence Alignment for long Sequence Read with Hash model;2024-02-07

5. Nucleic Transformer: Classifying DNA Sequences with Self-Attention and Convolutions;ACS Synthetic Biology;2023-11-02

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