Dynamic Alignment-Free and Reference-Free Read Compression-Reference-Cited by-同舟云学术

Dynamic Alignment-Free and Reference-Free Read Compression

Published:2018-07 Issue:7 Volume:25 Page:825-836
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Holley Guillaume¹²,Wittler Roland¹²,Stoye Jens¹,Hach Faraz³⁴⁵

Affiliation:

1. Genome Informatics, Faculty of Technology, Center for Biotechnology, Bielefeld University, Bielefeld, Germany.

2. International Research Training Group 1906 “Computational Methods for the Analysis of the Diversity and Dynamics of Genomes,” Bielefeld University, Bielefeld, Germany.

3. School of Computing Science, Simon Fraser University, Burnaby, Canada.

4. Department of Urologic Sciences, University of British Columbia, Vancouver, Canada.

5. Vancouver Prostate Centre, Vancouver, Canada.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2018.0068

Reference33 articles.

1. A global reference for human genetic variation

2. Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

3. Space/time trade-offs in hash coding with allowable errors

4. Compression of FASTQ and SAM Format Sequencing Data

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