Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction-Reference-Cited by-同舟云学术

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Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction

Published:2024-06-01 Issue:6 Volume:31 Page:549-563
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

von Löhneysen Sarah¹^ORCID,Spicher Thomas²³,Varenyk Yuliia²⁴,Yao Hua-Ting²,Lorenz Ronny²,Hofacker Ivo²,Stadler Peter F.¹²⁵⁶⁷

Affiliation:

1. Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universität Leipzig, Leipzig, Germany.

2. Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria.

3. UniVie Doctoral School Computer Science (DoCS), University of Vienna, Vienna, Austria.

4. Vienna BioCenter PhD Program, Doctoral School of the University of Vienna and Medical, University of Vienna, Vienna, Austria.

5. Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany.

6. Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia.

7. Santa Fe Institute, Santa Fe, New Mexico, USA.

Publisher

Mary Ann Liebert Inc

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0519

Reference65 articles.

1. Local RNA base pairing probabilities in large sequences

2. DUPLICATED RNA GENES IN TELEOST FISH GENOMES

3. Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches

4. Operon mRNAs are organized into ORF-centric structures that predict translation efficiency

5. Quantitative Dimethyl Sulfate Mapping for Automated RNA Secondary Structure Inference

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