Lifelong Reduction in LDL (Low-Density Lipoprotein) Cholesterol due to a Gain-of-Function Mutation in LDLR

Author:

Bjornsson Eythor123ORCID,Gunnarsdottir Kristbjorg1ORCID,Halldorsson Gisli H.1,Sigurdsson Asgeir1,Arnadottir Gudny A.1,Jonsson Hakon1,Olafsdottir Eva F.3,Niehus Sebastian45ORCID,Kehr Birte45ORCID,Sveinbjörnsson Gardar1,Gudmundsdottir Steinunn1ORCID,Helgadottir Anna1ORCID,Andersen Karl23ORCID,Thorleifsson Gudmar13ORCID,Eyjolfsson Gudmundur I.6,Olafsson Isleifur7,Sigurdardottir Olof8ORCID,Saemundsdottir Jona1,Jonsdottir Ingileif12,Magnusson Olafur Th.1,Masson Gisli1ORCID,Stefansson Hreinn1,Gudbjartsson Daniel F.19,Thorgeirsson Gudmundur13ORCID,Holm Hilma1ORCID,Halldorsson Bjarni V.110ORCID,Melsted Pall19,Norddahl Gudmundur L.1ORCID,Sulem Patrick1ORCID,Thorsteinsdottir Unnur12ORCID,Stefansson Kari12

Affiliation:

1. deCODE genetics/Amgen, Inc (E.B., K.G., G.H.H., A.S., G.A.A., H.J., G.S., S.G., A.H., G. Thorleifsson, J.S., I.J., O.T.M., G.M., H.S., D.F.G., G. Thorgeirsson, H.H., B.V.H., P.M., G.L.N., P.S., U.T., K.S.), University of Iceland.

2. Faculty of Medicine (E.B., K.A., I.J., U.T., K.S.), University of Iceland.

3. Department of Internal Medicine (E.B., E.F.O.), Division of Cardiology, Department of Internal Medicine (K.A., G. Thorgeirsson), Landspítali - The National University Hospital of Iceland, Reykjavík.

4. Berlin Institute of Health (S.N., B.K.), Humboldt-Universität zu Berlin & Berlin Institute of Health, Berlin, Germany.

5. Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin (S.N., B.K.), Humboldt-Universität zu Berlin & Berlin Institute of Health, Berlin, Germany.

6. The Laboratory in Mjódd, Reykjavík (G.I.E.).

7. Department of Clinical Biochemistry (I.O.), Landspítali - The National University Hospital of Iceland, Reykjavík.

8. Department of Clinical Biochemistry, Akureyri Hospital (O.S.).

9. School of Engineering and Natural Sciences (D.F.G., P.M.), University of Iceland.

10. School of Science and Engineering, Reykjavík University, Iceland (B.V.H.).

Abstract

Background: Loss-of-function mutations in the LDL (low-density lipoprotein) receptor gene ( LDLR ) cause elevated levels of LDL cholesterol and premature cardiovascular disease. To date, a gain-of-function mutation in LDLR with a large effect on LDL cholesterol levels has not been described. Here, we searched for sequence variants in LDLR that have a large effect on LDL cholesterol levels. Methods: We analyzed whole-genome sequencing data from 43 202 Icelanders. Single-nucleotide polymorphisms and structural variants including deletions, insertions, and duplications were genotyped using whole-genome sequencing-based data. LDL cholesterol associations were carried out in a sample of >100 000 Icelanders with genetic information (imputed or whole-genome sequencing). Molecular analyses were performed using RNA sequencing and protein expression assays in Epstein-Barr virus-transformed lymphocytes. Results: We discovered a 2.5-kb deletion (del2.5) overlapping the 3′ untranslated region of LDLR in 7 heterozygous carriers from a single family. Mean level of LDL cholesterol was 74% lower in del2.5 carriers than in 101 851 noncarriers, a difference of 2.48 mmol/L (96 mg/dL; P =8.4×10 8 ). Del2.5 results in production of an alternative mRNA isoform with a truncated 3′ untranslated region. The truncation leads to a loss of target sites for microRNAs known to repress translation of LDLR . In Epstein-Barr virus-transformed lymphocytes derived from del2.5 carriers, expression of alternative mRNA isoform was 1.84-fold higher than the wild-type isoform ( P =0.0013), and there was 1.79-fold higher surface expression of the LDL receptor than in noncarriers ( P =0.0086). We did not find a highly penetrant detrimental impact of lifelong very low levels of LDL cholesterol due to del2.5 on health of the carriers. Conclusions: Del2.5 is the first reported gain-of-function mutation in LDLR causing a large reduction in LDL cholesterol. These data point to a role for alternative polyadenylation of LDLR mRNA as a potent regulator of LDL receptor expression in humans.

Publisher

Ovid Technologies (Wolters Kluwer Health)

Subject

General Medicine

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