Using deep learning to track time × frequency whistle contours of toothed whales without human-annotated training data

Abstract

Many odontocetes produce whistles that feature characteristic contour shapes in spectrogram representations of their calls. Automatically extracting the time × frequency tracks of whistle contours has numerous subsequent applications, including species classification, identification, and density estimation. Deep-learning-based methods, which train models using analyst-annotated whistles, offer a promising way to reliably extract whistle contours. However, the application of such methods can be limited by the significant amount of time and labor required for analyst annotation. To overcome this challenge, a technique that learns from automatically generated pseudo-labels has been developed. These annotations are less accurate than those generated by human analysts but more cost-effective to generate. It is shown that standard training methods do not learn effective models from these pseudo-labels. An improved loss function designed to compensate for pseudo-label error that significantly increases whistle extraction performance is introduced. The experiments show that the developed technique performs well when trained with pseudo-labels generated by two different algorithms. Models trained with the generated pseudo-labels can extract whistles with an F1-score (the harmonic mean of precision and recall) of 86.31% and 87.2% for the two sets of pseudo-labels that are considered. This performance is competitive with a model trained with 12 539 expert-annotated whistles (F1-score of 87.47%).