mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking

Author:

Bokulich Nicholas A.1,Rideout Jai Ram1,Mercurio William G.1,Shiffer Arron1,Wolfe Benjamin2,Maurice Corinne F.3,Dutton Rachel J.4,Turnbaugh Peter J.5,Knight Rob678,Caporaso J. Gregory19ORCID

Affiliation:

1. Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA

2. Department of Biology, Tufts University, Medford, Massachusetts, USA

3. Department of Microbiology & Immunology Department, Microbiome and Disease Tolerance Centre, McGill University, Montreal, Quebec, Canada

4. Division of Biological Sciences, University of California San Diego, La Jolla, California, USA

5. Department of Microbiology and Immunology, GW Hooper Foundation, University of California, San Francisco, San Francisco, California, USA

6. Department of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA

7. Department of Pediatrics, University of California San Diego, La Jolla, California, USA

8. Center for Microbiome Innovation, University of California San Diego, La Jolla, California, USA

9. Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA

Abstract

The availability of standard and public mock community data will facilitate ongoing method optimizations, comparisons across studies that share source data, and greater transparency and access and eliminate redundancy. These are also valuable resources for bioinformatics teaching and training. This dynamic resource is intended to expand and evolve to meet the changing needs of the omics community.

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

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