Comparison of the d -Glutamate-Adding Enzymes from Selected Gram-Positive and Gram-Negative Bacteria

Abstract

ABSTRACT The biochemical properties of the d -glutamate-adding enzymes (MurD) from Escherichia coli , Haemophilus influenzae , Enterococcus faecalis , and Staphylococcus aureus were investigated to detect any differences in the activity of this enzyme between gram-positive and gram-negative bacteria. The genes ( murD ) that encode these enzymes were cloned into pMAL-c2 fusion vector and overexpressed as maltose-binding protein–MurD fusion proteins. Each fusion protein was purified to homogeneity by affinity to amylose resin. Proteolytic treatments of the fusion proteins with factor Xa regenerated the individual MurD proteins. It was found that these fusion proteins retain d -glutamate-adding activity and have K m and V max values similar to those of the regenerated MurDs, except for the H. influenzae enzyme. Substrate inhibition by UDP- N -acetylmuramyl- l -alanine, the acceptor substrate, was observed at concentrations greater than 15 and 30 μM for E. coli and H. influenzae MurD, respectively. Such substrate inhibition was not observed with the E. faecalis and S. aureus enzymes, up to a substrate concentration of 1 to 2 mM. In addition, the two MurDs of gram-negative origin were shown to require monocations such as NH 4 + and/or K + , but not Na + , for optimal activity, while anions such as Cl − and SO 4 2− had no effect on the enzyme activities. The activities of the two MurDs of gram-positive origin, on the other hand, were not affected by any of the ions tested. All four enzymes required Mg 2+ for the ligase activity and exhibited optimal activities around pH 8. These differences observed between the gram-positive and gram-negative MurDs indicated that the two gram-negative bacteria may apply a more stringent regulation of cell wall biosynthesis at the early stage of peptidoglycan biosynthesis pathway than do the two gram-positive bacteria. Therefore, the MurD-catalyzed reaction may constitute a fine-tuning step necessary for the gram-negative bacteria to optimally maintain its relatively thin yet essential cell wall structure during all stages of growth.