Draft Genome Sequence of Streptomyces clavuligerus NRRL 3585, a Producer of Diverse Secondary Metabolites-Reference-Cited by-同舟云学术

Draft Genome Sequence of Streptomyces clavuligerus NRRL 3585, a Producer of Diverse Secondary Metabolites

Published:2010-12 Issue:23 Volume:192 Page:6317-6318
ISSN:0021-9193
Container-title:Journal of Bacteriology
language:en
Short-container-title:J Bacteriol

Author:

Song Ju Yeon¹²,Jeong Haeyoung¹,Yu Dong Su¹,Fischbach Michael A.³,Park Hong-Seog¹,Kim Jae Jong⁴,Seo Jeong-Sun⁵,Jensen Susan E.⁶,Oh Tae Kwang¹⁷,Lee Kye Joon²,Kim Jihyun F.¹

Affiliation:

1. Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea

2. School of Biological Sciences, Seoul National University, Seoul 151-747, Republic of Korea

3. Department of Bioengineering and Therapeutic Sciences and California Institute of Quantitative Biosciences, University of California San Francisco, San Francisco, California 94158

4. GenoTech Corporation, Research and Development Center, 59-5 Jang-Dong, Yuseong-gu, Daejeon 305-343, Republic of Korea

5. Macrogen Inc., Seoul 153-023, Republic of Korea

6. Department of Biological Sciences, University of Alberta, Edmonton T6G 2E9, Alberta, Canada

7. 21C Frontier Microbial Genomics and Applications Center, Yuseong-gu, Daejeon 305-806, Republic of Korea

Abstract

ABSTRACT Streptomyces clavuligerus is an important industrial strain that produces a number of antibiotics, including clavulanic acid and cephamycin C. A high-quality draft genome sequence of the S. clavuligerus NRRL 3585 strain was produced by employing a hybrid approach that involved Sanger sequencing, Roche/454 pyrosequencing, optical mapping, and partial finishing. Its genome, comprising four linear replicons, one chromosome, and four plasmids, carries numerous sets of genes involved in the biosynthesis of secondary metabolites, including a variety of antibiotics.

Publisher

American Society for Microbiology

Subject

Molecular Biology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/JB.00859-10

Reference22 articles.

1. Aziz, R. K., D. Bartels, A. A. Best, M. DeJongh, T. Disz, R. A. Edwards, K. Formsma, S. Gerdes, E. M. Glass, M. Kubal, F. Meyer, G. J. Olsen, R. Olson, A. L. Osterman, R. A. Overbeek, L. K. McNeil, D. Paarmann, T. Paczian, B. Parrello, G. D. Pusch, C. Reich, R. Stevens, O. Vassieva, V. Vonstein, A. Wilke, and O. Zagnitko. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9 : 75.

2. Badger, J. H., and G. J. Olsen. 1999. CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol. 16 : 512-524.

3. Besemer, J., and M. Borodovsky. 2005. GeneMark: Web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33 : W451-W454.

4. Brown, A. G., D. Butterworth, M. Cole, G. Hanscombe, J. D. Hood, C. Reading, and G. N. Rolinson. 1976. Naturally occurring β-lactamase inhibitors with antibacterial activity. J. Antibiot. 29 : 668-669.

5. Brown, D., J. R. Evans, and R. A. Fletton. 1979. Structures of three novel β-lactams isolated from Streptomyces clavuligerus. J. Chem. Soc. Chem. Commun. (Camb.) 1979 : 282-283.

Cited by 51 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Whole Genome Analysis and Assessment of the Metabolic Potential of Streptomyces carpaticus SCPM-O-B-9993, a Promising Phytostimulant and Antiviral Agent;Biology;2024-05-28

2. Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation;Marine Drugs;2023-05-19

3. Teleocidin-producing genotype of Streptomyces clavuligerus ATCC 27064;Applied Microbiology and Biotechnology;2022-02

4. Adaptive laboratory evolution triggers pathogen-dependent broad-spectrum antimicrobial potency in Streptomyces;Journal of Genetic Engineering and Biotechnology;2022-01-03

5. Genome editing reveals that pSCL4 is required for chromosome linearity in Streptomyces clavuligerus;Microbial Genomics;2021-11-05