Illumina short read-based shotgun metagenomic data sets of simulated bacterial communities derived from fresh spinach and surface water-Reference-Cited by-同舟云学术

Illumina short read-based shotgun metagenomic data sets of simulated bacterial communities derived from fresh spinach and surface water

Published:2024-07-18 Issue:7 Volume:13 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Chen Zhao¹^ORCID,Meng Jianghong¹²

Affiliation:

1. Joint Institute for Food Safety and Applied Nutrition, and Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA

2. Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA

Abstract

ABSTRACT Paired-end short reads of Illumina HiSeq, MiSeq, and NovaSeq of simulated bacterial communities from fresh spinach and surface water were generated in silico at various sequencing depths. Multidrug-resistant Salmonella enterica serotype Indiana was included in the spinach community, while the water community contained multidrug-resistant Pseudomonas aeruginosa .

Publisher

American Society for Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00375-24

Reference5 articles.

1. Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities

2. Critical Assessment of Short-Read Assemblers for the Metagenomic Identification of Foodborne and Waterborne Pathogens Using Simulated Bacterial Communities

3. Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons

4. A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System

5. Simulating Illumina metagenomic data with InSilicoSeq