Identification of Common CD8 + T Cell Epitopes from Lassa Fever Survivors in Nigeria and Sierra Leone

Author:

Sakabe Saori1,Hartnett Jessica N.2,Ngo Nhi1,Goba Augustine34,Momoh Mambu345,Sandi John Demby346,Kanneh Lansana34,Cubitt Beatrice1,Garcia Selma D.1,Ware Brian C.1,Kotliar Dylan7,Robles-Sikisaka Refugio18,Gangavarapu Karthik9,Branco Luis M.10,Eromon Philomena11,Odia Ikponmwosa12,Ogbaini-Emovon Ephraim12,Folarin Onikepe1113,Okogbenin Sylvanus12,Okokhere Peter O.121415,Happi Christian111213,Sabeti Pardis C.71617,Andersen Kristian G.18,Garry Robert F.210,de la Torre Juan Carlos1,Grant Donald S.3418,Schieffelin John S.19,Oldstone Michael B. A.1,Sullivan Brian M.1

Affiliation:

1. Viral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA

2. Department of Microbiology and Immunology, Tulane University School of Medicine, New Orleans, Louisiana, USA

3. Viral Hemorrhagic Fever Program, Kenema Government Hospital, Kenema, Sierra Leone

4. Ministry of Health and Sanitation, Freetown, Sierra Leone

5. Eastern Polytechnic Institute, Kenema, Sierra Leone

6. Njala University, Moyamba, Sierra Leone

7. FAS Center for Systems Biology, Harvard University, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA

8. Scripps Translational Research Institute, The Scripps Research Institute, La Jolla, California, USA

9. Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California, USA

10. Zalgen Labs, Germantown, Maryland, USA

11. African Center of Excellence for Genomics of Infectious Disease (ACEGID), Redeemers University, Ede, Nigeria

12. Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria

13. Department of Biological Sciences, Redeemers University, Ede, Nigeria

14. Department of Medicine, Irrua Specialist Teaching Hospital, Irrua, Nigeria

15. Department of Medicine, Faculty of Clinical Sciences, Ambrose Alli University, Ekpoma, Nigeria

16. Sherlock Biosciences, Cambridge, Massachusetts, USA

17. Danaher Corporation, Washington, DC, USA

18. College of Medicine and Allied Health Sciences, University of Sierra Leone, Freetown, Sierra Leone

19. Department of Pediatrics, Tulane University School of Medicine, New Orleans, Louisiana, USA

Abstract

The high morbidity and mortality associated with clinical cases of Lassa fever, together with the lack of licensed vaccines and limited and partially effective interventions, make Lassa virus (LASV) an important health concern in its regions of endemicity in West Africa. Previous infection with LASV protects from disease after subsequent exposure, providing a framework for designing vaccines to elicit similar protective immunity. Multiple major lineages of LASV circulate in West Africa, and therefore, ideal vaccine candidates should elicit immunity to all lineages. We therefore sought to identify common T cell epitopes between Lassa fever survivors from Sierra Leone and Nigeria, where distinct lineages circulate. We identified three such epitopes derived from highly conserved regions within LASV proteins. In this process, we also identified nine other T cell epitopes. These data should help in the design of an effective pan-LASV vaccine.

Funder

HHS | NIH | National Institute of Allergy and Infectious Diseases

Publisher

American Society for Microbiology

Subject

Virology,Insect Science,Immunology,Microbiology

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