Whole-Genome Characterization and Genotyping of Global WU Polyomavirus Strains-Reference-Cited by-同舟云学术

Whole-Genome Characterization and Genotyping of Global WU Polyomavirus Strains

Published:2010-06-15 Issue:12 Volume:84 Page:6229-6234
ISSN:0022-538X
Container-title:Journal of Virology
language:en
Short-container-title:J Virol

Author:

Bialasiewicz Seweryn¹²,Rockett Rebecca¹²,Whiley David W.¹²,Abed Yacine³,Allander Tobias⁴,Binks Michael⁵,Boivin Guy³,Cheng Allen C.⁵⁶,Chung Ju-Young⁷,Ferguson Patricia E.⁸⁹,Gilroy Nicole M.⁸⁹,Leach Amanda J.⁵,Lindau Cecilia⁴,Rossen John W.¹⁰,Sorrell Tania C.⁸⁹,Nissen Michael D.¹²¹¹,Sloots Theo P.¹²¹¹

Affiliation:

1. Queensland Paediatric Infectious Diseases Laboratory, Sir Albert Sakzewski Virus Research Centre, Queensland Children's Medical Research Institute, Children's Health Service District, Brisbane, Queensland, Australia

2. Clinical Medical Virology Centre, University of Queensland, Brisbane, Queensland, Australia

3. Le Centre Hospitalier Universitaire de Québec and Laval University, Québec City, Quebec, Canada

4. Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet and Department of Clinical Microbiology, Karolinska University Hospital, SE-17176 Stockholm, Sweden

5. Menzies School of Health Research, Darwin, Northern Territory, Australia

6. Department of Epidemiology and Preventive Medicine, Monash University, Melbourne, Victoria, Australia

7. Department of Pediatrics, Sanggyepaik Hospital, Inje University College of Medicine, Obang-dong, Kyungnam, Republic of Korea

8. Centre for Infectious Diseases and Microbiology, Westmead Hospital, Westmead, New South Wales, Australia

9. NHMRC Centre of Clinical Research Excellence—Infection & Bioethics in Haematological Malignancy, Westmead Hospital, Westmead, New South Wales, Australia

10. Laboratory of Medical Microbiology and Immunology, St. Elisabeth Hospital, Tilburg, Netherlands

11. Pathology Queensland Central, Brisbane, Queensland, Australia

Abstract

ABSTRACT Exploration of the genetic diversity of WU polyomavirus (WUV) has been limited in terms of the specimen numbers and particularly the sizes of the genomic fragments analyzed. Using whole-genome sequencing of 48 WUV strains collected in four continents over a 5-year period and 16 publicly available whole-genome sequences, we identified three main WUV clades and five subtypes, provisionally termed Ia, Ib, Ic, II, IIIa, and IIIb. Overall nucleotide variation was low (0 to 1.2%). The discriminatory power of the previous VP2 fragment typing method was found to be limited, and a new, larger genotyping region within the VP2/1 interface was proposed.

Publisher

American Society for Microbiology

Subject

Virology,Insect Science,Immunology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/JVI.02658-09

Reference29 articles.

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4. Bialasiewicz, S., D. M. Whiley, S. B. Lambert, K. Jacob, C. Bletchly, D. Wang, M. D. Nissen, and T. P. Sloots. 2008. Presence of the newly discovered human polyomaviruses KI and WU in Australian patients with acute respiratory tract infection. J. Clin. Virol.41:63-68.

5. Bialasiewicz, S., D. M. Whiley, S. B. Lambert, M. D. Nissen, and T. P. Sloots. 2009. Detection of BK, JC, WU, or KI polyomaviruses in faecal, urine, blood, cerebrospinal fluid and respiratory samples. J. Clin. Virol.45:249-254.

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