Genome-Scale Modeling Specifies the Metabolic Capabilities of <i>Rhizophagus irregularis</i>-Reference-Cited by-同舟云学术

Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis

Published:2022-02-22 Issue:1 Volume:7 Page:
ISSN:2379-5077
Container-title:mSystems
language:en
Short-container-title:mSystems

Author:

Wendering Philipp¹^ORCID,Nikoloski Zoran¹²^ORCID

Affiliation:

1. Bioinformatics, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany

2. Systems Biology and Mathematical Modeling, Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany

Abstract

Mounting evidence points to the benefits of the symbiotic interactions between the arbuscular mycorrhiza fungus Rhizophagus irregularis and crops; however, the molecular mechanisms underlying the physiological responses of this fungus to different host plants and environments remain largely unknown. We present a manually curated, enzyme-constrained, genome-scale metabolic model of R. irregularis that can accurately predict experimentally observed phenotypes.

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/msystems.01216-21

Reference113 articles.

1. Smith S, Read D. 2008. Mycorrhizal symbiosis, 3rd ed. Academic Press, London, United Kingdom.

2. Arbuscular mycorrhiza: the mother of plant root endosymbioses

3. Trading on the arbuscular mycorrhiza market: from arbuscules to common mycorrhizal networks

4. ‘ Glomus intraradices DAOM197198’, a model fungus in arbuscular mycorrhiza research, is not Glomus intraradices

5. Host‐ and stage‐dependent secretome of the arbuscular mycorrhizal fungus Rhizophagus irregularis

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