Complete genome sequences of six duckweed-associated bacterial strains for studying community assembly in synthetic plant microbiome-Reference-Cited by-同舟云学术

Complete genome sequences of six duckweed-associated bacterial strains for studying community assembly in synthetic plant microbiome

Published:2024-04-11 Issue:4 Volume:13 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Ishizawa Hidehiro¹²³^ORCID,Tada Minami²,Tashiro Yosuke⁴⁵^ORCID,Kuroda Masashi²⁶^ORCID,Inoue Daisuke²^ORCID,Dohra Hideo³⁷^ORCID,Futamata Hiroyuki³⁴⁵^ORCID,Ike Michihiko²

Affiliation:

1. Department of Applied Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, Hyogo, Japan

2. Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, Suita, Osaka, Japan

3. Research Institute of Green Science and Technology, Shizuoka University, Suruga-ku, Shizuoka, Japan

4. Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University, Hamamatsu, Japan

5. Graduate School of Science and Technology, Shizuoka University, Hamamatsu, Japan

6. Faculty of Social and Environmental Studies, Tokoha University, Shizuoka, Japan

7. Department of Science, Graduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, Japan

Abstract

ABSTRACT We report the complete genome sequences of six bacterial strains isolated from a floating macrophyte, duckweed. These six strains, representing the six dominant families of the natural duckweed microbiome, establish a simple model ecosystem when inoculated onto sterilized duckweed. Their genomes would provide insights into community assembly in plant microbiome.

Funder

MEXT | Japan Society for the Promotion of Science

MEXT | JST | Science and Technology Research Partnership for Sustainable Development

Publisher

American Society for Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.01280-23

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5. SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation