Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs-Reference-Cited by-同舟云学术

Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs

Published:2021-04-15 Issue:15 Volume:10 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Myers Kevin S.¹^ORCID,Place Michael¹,Kominek Jacek¹,Noguera Daniel R.¹²,Donohue Timothy J.¹³^ORCID

Affiliation:

1. Wisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin—Madison, Madison, Wisconsin, USA

2. Department of Civil & Environmental Engineering, University of Wisconsin—Madison, Madison, Wisconsin, USA

3. Department of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA

Abstract

Predicting potential DNA binding motifs is a critical part of understanding gene expression across all domains of life. Here, we report the development of Delila-PY, an easy-to-use pipeline to utilize the Delila suite to identify DNA binding motifs.

Funder

U.S. Department of Energy

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.00160-21

Reference13 articles.

1. BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes;Liu X;Pac Symp Biocomput,2001

2. MEME SUITE: tools for motif discovery and searching

3. A design for computer nucleic-acid-sequence storage, retrieval, and manipulation

4. Delila system tools

5. Sequence logos: a new way to display consensus sequences

Cited by 1 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Promoter Architecture Differences among Alphaproteobacteria and Other Bacterial Taxa;mSystems;2021-08-31