Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population-Reference-Cited by-同舟云学术

Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population

Published:2018-03-21 Issue:1 Volume:9 Page:
ISSN:2049-1891
Container-title:Journal of Animal Science and Biotechnology
language:en
Short-container-title:J Animal Sci Biotechnol

Author:

Ye Shaopan,Yuan Xiaolong,Lin Xiran,Gao Ning,Luo Yuanyu,Chen Zanmou,Li Jiaqi,Zhang Xiquan,Zhang Zhe^ORCID

Funder

The National Natural Science Foundation of China

The China Agricultural Research System

The Science Innovation Project of Guangdong

The Special Program for Applied Research on Super Computation of the NSFC-Guangdong Joint Fund (the second phase), and technical support from the National Supercomputer Center in Guangzhou

Publisher

Springer Science and Business Media LLC

Subject

Animal Science and Zoology,Biochemistry,Food Science,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s40104-018-0241-5.pdf

Reference60 articles.

1. Marchini J, Howie B. Genotype imputation for genome-wide association studies. Nat Rev Genet. 2010;11(7):499–511.

2. de los Campos G, Gianola D, Allison DB. Predicting genetic predisposition in humans: the promise of whole-genome markers. Nat Rev Genet. 2010;11(12):880–6.

3. Klein RJ. Complement factor H polymorphism in age-related macular degeneration. Science. 2005;308(5720):385–9.

4. Khatkar MS, Nicholas FW, Collins AR, Zenger KR, Cavanagh JAL, Barris W, et al. Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel. BMC Genomics. 2008;9(1):187.

5. Yang J, Bakshi A, Zhu Z, Hemani G, Vinkhuyzen AAE, Lee SH, et al. Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index. Nat Genet. 2015;47(10):1114–20.

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