The difficulty of protein structure alignment under the RMSD

Author:

Li Shuai Cheng

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Molecular Biology,Structural Biology

Reference29 articles.

1. Perutz MF, Rossmann MG, Cullis AF, Muirhead H, Will G: North ACT: Structure of myoglobin: a three-dimensional Fourier synthesis at 5.5 Angstrom resolution. Nature. 1960, 185: 416-422.

2. R Kolodny PK, Levitt M: Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. J Comput Biol. 2005, 346 (4): 1173-1188.

3. Sippl MJ: On distance and similarity in fold space. Bioinformatics. 2008, 24 (6): 872-873.

4. , : Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. Protein Sci. 2004, 13 (7): 1865-1874.

5. Shibuya T, Jansso J, Sadakane K: Linear-time protein 3-D structure searching with insertions and deletions. Algorithms Mol Biol. 2010, 5 (7): 1-8.

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