Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation-Reference-Cited by-同舟云学术

Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation

Published:2015-06-11 Issue:S7 Volume:16 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Wang Junbai,Malecka Agnieszka,Trøen Gunhild,Delabie Jan

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/1471-2164-16-S7-S12.pdf

Reference43 articles.

1. Farnham PJ: Insights from genomic profiling of transcription factors. Nat Rev Genet. 2009, 10 (9): 605-616. 10.1038/nrg2636.

2. Tanay A: Extensive low-affinity transcriptional interactions in the yeast genome. Genome Research. 2006, 16 (8): 962-972. 10.1101/gr.5113606.

3. Gordan R, Hartemink AJ, Bulyk ML: Distinguishing direct versus indirect transcription factor-DNA interactions. Genome Research. 2009, 19 (11): 2090-2100. 10.1101/gr.094144.109.

4. Park PJ: ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet. 2009, 10 (10): 669-680. 10.1038/nrg2641.

5. Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, et al: Evaluation of methods for modeling transcription factor sequence specificity. Nature Biotechnology. 31 (2): 126-134.

Cited by 20 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Identifying functional regulatory mutation blocks by integrating genome sequencing and transcriptome data;iScience;2023-08

2. DNA selection by the master transcription factor PU.1;Cell Reports;2023-07

3. On the incongruence of genotype-phenotype and fitness landscapes;PLOS Computational Biology;2022-09-19

4. Chromatin modifiers – Coordinators of estrogen action;Biomedicine & Pharmacotherapy;2022-09

5. On the incongruence of genotype-phenotype and fitness landscapes;2022-02-02