Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains-Reference-Cited by-同舟云学术

Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains

Published:2019-01-09 Issue:1 Volume:18 Page:
ISSN:1475-2859
Container-title:Microbial Cell Factories
language:en
Short-container-title:Microb Cell Fact

Author:

Massaiu Ilaria,Pasotti Lorenzo,Sonnenschein Nikolaus,Rama Erlinda,Cavaletti Matteo,Magni Paolo,Calvio Cinzia,Herrgård Markus J.

Funder

Fondazione Cariplo

Horizon 2020

Publisher

Springer Science and Business Media LLC

Subject

Applied Microbiology and Biotechnology,Bioengineering,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12934-018-1052-2.pdf

Reference74 articles.

1. Kunst F, et al. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature. 1997;390(6657):249–56.

2. Muntel J, Fromion V, Goelzer A, Maabeta S, Mader U, Buttner K, Hecker M, Becher D. Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MSE). Mol Cell Proteom. 2014;13:1008–199.

3. Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, et al. Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science. 2012;335(6072):1103–6.

4. Hahne H, Mader U, Otto A, Bonn F, Steil L, Bremer E, Hecker M, Becher D. A comprehensive proteomics and transcriptomics analysis of Bacillus subtilis salt stress adaptation. J Bacteriol. 2010;192(3):870–82.

5. Van Duy N, Mader U, Tran NP, Cavin JF, Tam LT, Albrecht D, Hecker M, Antelmann H. The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid. Proteomics. 2007;7(5):698–710.

Cited by 61 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. ECMpy 2.0: A Python package for automated construction and analysis of enzyme-constrained models;Synthetic and Systems Biotechnology;2024-09

2. Precise metabolic modeling in post-omics era: accomplishments and perspectives;Critical Reviews in Biotechnology;2024-08-28

3. Production and molecular weight variation of poly-γ-glutamic acid using a recombinant Bacillus subtilis with various Pgs-component ratios;Bioscience, Biotechnology, and Biochemistry;2024-07-02

4. Current State, Challenges, and Opportunities in Genome-Scale Resource Allocation Models: A Mathematical Perspective;Metabolites;2024-06-28

5. Metabolic Engineering of Bacillus subtilis for the Production of Poly-γ-Glutamic Acid from Glycerol Feedstock;Fermentation;2024-06-17