Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis-Reference-Cited by-同舟云学术

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Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis

Published:2016-01-16 Issue:1 Volume:17 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Dubinkina Veronika B.,Ischenko Dmitry S.,Ulyantsev Vladimir I.,Tyakht Alexander V.,Alexeev Dmitry G.

Funder

Ministry of Education and Science of the Russian Federation (RU)

Government of Russian Federation

Russian Scientific Foundation

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-015-0875-7

Reference49 articles.

1. Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, et al.Community-wide analysis of microbial genome sequence signatures. Genome Biol. 2009; 10(8):85. doi: 10.1186/gb-2009-10-8-r85 .

2. Park EJ, Kim KH, Abell GCJ, Kim MS, Roh SW, Bae JW. Metagenomic Analysis of the Viral Communities in Fermented Foods. Appl Environ Microbiol. 2010; 77(4):1284–91. doi: 10.1128/AEM.01859-10 .

3. Singh B, Gautam SK, Verma V, Kumar M, Singh B. Metagenomics in animal gastrointestinal ecosystem: Potential biotechnological prospects. Anaerobe. 2008; 14(3):138–44. doi: 10.1016/j.anaerobe.2008.03.002 .

4. Morgan XC, Segata N, Huttenhower C. Biodiversity and functional genomics in the human microbiome. Trends in genetics: TIG. 2013; 29(1):51–8. doi: 10.1016/j.tig.2012.09.005 .

5. Riesenfeld CS, Schloss PD, Handelsman J. Metagenomics: Genomic Analysis of Microbial Communities. Annu Rev Genet. 2004; 38:525–552. doi: 10.1146/annurev.genet.38.072902.091216 .

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