LimeSeg: a coarse-grained lipid membrane simulation for 3D image segmentation

Author:

Machado Sarah,Mercier Vincent,Chiaruttini NicolasORCID

Funder

FP7 People: Marie-Curie Actions

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference45 articles.

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2. Beucher S, Lantuejoul C. Use of watersheds in contour detection. In: Proceedings of the International Workshop on Image Processing. CCETT: 1979. http://cmm.ensmp.fr/~beucher/publi/watershed.pdf .

3. Stegmaier J, Amat F, Lemon WC, McDole K, Wan Y, Teodoro G, Mikut R, Keller PJ. Real-time three-dimensional cell segmentation in large-scale microscopy data of developing embryos. Dev Cell. 2016; 36(2):225–40.

4. de Reuille PB, Routier-Kierzkowska A-L, Kierzkowski D, Bassel GW, Schüpbach T, Tauriello G, Bajpai N, Strauss S, Weber A, Kiss A, et al. Morphographx: a platform for quantifying morphogenesis in 4d. Elife. 2015; 4:05864.

5. Sommer C, Straehle CN, Koethe U, Hamprecht FA, et al.Ilastik: Interactive learning and segmentation toolkit. In: Eighth IEEE international Symposium on Biomedical imaging (ISBI), vol. 2, no. 5: 2011. p. 230–233. https://doi.org/10.1109/ISBI.2011.5872394 .

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