Spherical: an iterative workflow for assembling metagenomic datasets-Reference-Cited by-同舟云学术

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Spherical: an iterative workflow for assembling metagenomic datasets

Published:2018-01-24 Issue:1 Volume:19 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Hitch Thomas C. A.,Creevey Christopher J.

Funder

Biotechnology and Biological Sciences Research Council

New Zealand fund for Global Partnerships in Livestock Emissions Research

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-018-2028-2.pdf

Reference29 articles.

1. Krohn-Molt I, et al. Metagenome survey of a multispecies and alga-associated biofilm revealed key elements of bacterial-algal interactions in photobioreactors. Appl Environ Microbiol. 2013;79:6196–206.

2. van der Lelie D, et al. The metagenome of an anaerobic microbial community decomposing poplar wood chips. PLoS One. 2012;7:e36740.

3. Modi SR, Lee HH, Spina CS, Collins JJ. Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome. Nature. 2013;499:219–22.

4. Nagarajan N, Pop M. Sequence assembly demystified. Nat Rev Genet. 2013;14:157–67.

5. Medvedev, P., Georgiou, K., Myers, G. & Brudno, M. Computability of Models for Sequence Assembly. 289–301 (2007).

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